Poster Presentations

2015

Kiyoko Aoki-Kinoshita, Sanjay Agravat, Nobuyuki P. Aoki, Sena Arpinar, Richard D. Cummings, Akihiro Fujita, Noriaki Fujita, Gerald M. Hart, Stuart M. Haslam, Toshisuke Kawasaki, Masaaki Matsubara, Kelley W. Moreman, Shujiro Okuda, Michael Pierce, René Ranzinger, Toshihide Shikanai, Daisuke Shinmachi, Elena Solovieva, Yoshinori Suzuki, Shinichiro Tsuchiya, Issaku Yamada, William S. York, Joseph Zaia and Hisashi Narimatsu. GlyTouCan: Development of the Glycan Repository. #148. Annual Meeting of the Society for Glycobiology. San Francisco, CA, USA, December 1-4, 2015.

Issaku Yamada, Kiyoko F. Aoki-Kinoshita, Masaaki Matsubara, Nobuyuki Aoki, Daisuke Shinmachi, Hisashi Narimatsu. A substructure search method for carbohydrate structures based on the WURCS notation using Semantic Web technology. #139. Annual Meeting of the Society for Glycobiology. San Francisco, CA, USA, December 1-4, 2015.

Keiko Tokunaga and Kiyoko Aoki-Kinoshita. Development of a visualization tool for browsing glycan structure relationships in RDF. P40.(Poster award) Annual Meeting of Japanese Society for Bioinformatics, Kyoto, October 29-31, 2015.

Yuki Ushioda and Kiyoko Aoki-Kinoshita. Introduction of Semantic Web into FlyGlycoDB, The Glycan Related Gene Database of Drosophila. P59. Annual Meeting of Japanese Society for Bioinformatics, Kyoto, October 29-31, 2015.

Masaaki Shiota, Michiko Ehara and Kiyoko Kinoshita. Analysis of lectin array data using glycoinformatics. P34. Annual Meeting of Japanese Society for Bioinformatics, Kyoto, October 29-31, 2015.

Nobuyuki Hashimoto and Kiyoko Kinoshita. Development of Generating Tool for SBML Model of Pathway Related to Glycans. P36. Annual Meeting of Japanese Society for Bioinformatics, Kyoto, October 29-31, 2015.

2014

Yushi Takahashi and Kiyoko Aoki-Kinoshita. Refactoring of NeuronDB, a database of neuronal experimental data. #24. GIW ISCB-ASIA 2014, Odaiba, Tokyo, December 15-17, 2014.

Yuki Ushioda, Shinichiro Tsuchiya and Kiyoko Aoki-Kinoshita. Modification of the RINGS Glycan Structure Conversion Tool for Utilization in the International Glycan Structure Repository. #89. GIW ISCB-ASIA 2014, Odaiba, Tokyo, December 15-17, 2014.

Masaaki Shiota, Michiko Ehara and Kiyoko Aoki-Kinoshita. Analysis of lectin array data using the Glycan Kernel Tool. #90. GIW ISCB-ASIA 2014, Odaiba, Tokyo, December 15-17, 2014.

Shinichiro Tsuchiya and Kiyoko Aoki-Kinoshita. Implementation of WURCS converter tool. #92. GIW ISCB-ASIA 2014, Odaiba, Tokyo, December 15-17, 2014.

Risa Sekimoto, Yushi Takahashi and Kiyoko Aoki-Kinoshita. Enhancements of GlycomeAtlas: incorporation of glycan metadata. #93. GIW ISCB-ASIA 2014, Odaiba, Tokyo, December 15-17, 2014.

Keiko Tokunaga, Hiromu Takematsu and Kiyoko Aoki-Kinoshita. Simulation analysis of signaling in B cell activation with CellDesigner. #102. GIW ISCB-ASIA 2014, Odaiba, Tokyo, December 15-17, 2014.

Matthew Campbell, Robyn Peterson, Kiyoko F. Aoki-Kinoshita, Jodie Abrahams, Julien Mariethoz, Frederique Lisacek, Nicolle Packer. UniCarbKB: a glycobioinformatics infrastructure for data discovery using semanics. #225. Joint Meeting of the Society for Glycobiology and the Japanese Society of Carbohydrate Research. Honolulu, Hawaii, November 16-19, 2014.

Toshihide Shikanai, Noriaki Fujita, Yoshinori Suzuki, Elena Solovieva, Kiyoko Aoki-Kinoshita, Madoka Soyama, Atsushi Kuno, Hiroyuki Kaji, Hisashi Narimatsu. Next JCGGDB Plan for Semantic Web. #222. Joint Meeting of the Society for Glycobiology and the Japanese Society of Carbohydrate Research. Honolulu, Hawaii, November 16-19, 2014.

Masae Hosoda, Yukie Akune, Kiyoko F. Aoki-Kinoshita. Lectin recognition pattern analysis using MCAW. #214. Joint Meeting of the Society for Glycobiology and the Japanese Society of Carbohydrate Research. Honolulu, Hawaii, November 16-19, 2014.

Yukie Akune, Matthew P. Campbell, Junqi Zhang, Kiyoko F. Aoki-Kinoshita, Nicolle H. Packer. Comprehensive analysis of the N-glycan biosynthetic pathway using bioinformatics. #212 Joint Meeting of the Society for Glycobiology and the Japanese Society of Carbohydrate Research. Honolulu, Hawaii, November 16-19, 2014.

Issaku Yamada, Kiyoko F. Aoki-Kinoshita, Masaaki Matsubara, Shinichiro Tsuchiya, Masaaki Kotera, Kenichi Tanaka, Noriaki Fujita, Toshihide Shikanai, Masaki Kato, Shin Kawano, Hiromichi Sawaki, Hisashi Narimatsu. WURCS: Web3 Unique Representation of Carbohydrate Structures for Semantic Web, #211, Joint Meeting of the Society for Glycobiology and the Japanese Society of Carbohydrate Research. Honolulu, Hawaii, November 16-19, 2014.

Yukie Akune, Matthew P. Campbell, Junqi Zhang, Kiyoko F. Aoki-Kinoshita, Nicolle H. Packer. Comprehensive analysis of the N-glycan biosynthetic pathway using bioinformatics. P-140. The 33rd Japanese Society for Carbohydrate Research Annual Meeting, Nagoya, August 10-12, 2014.

Nobuyuki Hashimoto, Kiyoko F. Aoki-Kinoshita. Simulation of glycan pathways with GNAT. P-113. The 33rd Japanese Society for Carbohydrate Research Annual Meeting, Nagoya, August 10-12, 2014.

Rene Ranzinger, Kiyoko F. Aoki-Kinoshita, Matthew P. Campbell, Shin Kawano, Thomas Lütteke, Shujiro Okuda, Daisuke Shinmachi, Toshihide Shikanai, Hiromichi Sawaki, Philip Toukach, Masaaki Matsubara, Issaku Yamada, Hisashi Narimatsu, "GlycoRDF: Ontology to standardize Glycomics data in RDF" P-103. The 33rd Japanese Society for Carbohydrate Research Annual Meeting, Nagoya, August 10-12, 2014.

Kiyoko Aoki-Kinoshita, Nobuyuki Aoki, Daisuke Shinmachi, Akihiro Fujita, Shinichiro Tsuchiya, Masaaki Matsubara, Issaku Yamada, Shujiro Okuda, Toshihide Shikanai, Noriaki Fujita, Elena Solovieva, Yoshinori Suzuki, Toshisuke Kawasaki and Hisashi Narimatsu. #98. Collaborative Development of GlyTouCan: an International Glycan Structure Repository. 3rd Joint Meeting on Informatics in Biology, Medicine and Pharmacology (IIBMP), Sendai International Center, October 2-4, 2014.

Chuan-Yih Yu, Ryutaro Ichise, Kiyoko F Aoki-Kinoshita, Haixu Tang, "Glycan Elution Time Predictor for Glycan Profiling by Liquid Chromatography Coupled Mass Spectrometry" ThP 165. The 62nd ASMS Conference on Mass Spectrometry, Baltimore, MD, USA, June 15-19, 2014.

2013

Yushi Takahashi and Kiyoko F. Aoki-Kinoshita. "GlycomeAtlas: A visualization tool of glycan structure expression in human and mouse". P21. The 24th International Conference on Genome Informatics (GIW). Singapore, December 16-18, 2013.

Akihiro Fujita and Kiyoko F. Aoki-Kinoshita. "Development of an algorithm to analyze atomic structures of glycan". P31. The 24th International Conference on Genome Informatics (GIW). Singapore, December 16-18, 2013.

Hosoda M, Aoki-Kinoshita KF, "Bioinformatics study for elucidation of lectin recognition patterns" POS-01-269, HUPO 2013, Yokohama, September 14-18, 2013.

Kiyoko Aoki-Kinoshita.GlycomeAtlas: A visualization tool for human and mouse glycan structure expression. P-117, The 32nd Japanese Society for Carbohydrate Research Annual Meeting, Osaka, August 5-7, 2013.

2012

Aoki-Kinoshita KF. "RINGS: a web resource of data mining and analytical tools for glycomics research", The 15th Annual San Diego Glycobiology Symposium, San Diego, CA, USA, March 16-17, 2012.

2011

Araki J, Aoki-Kinoshita KF. "Development of a data curation system in FlyGlycoDB", Annual Meeting for the Japanese Society for Bioinformatics. Kobe, Japan, P-7, November 8-10, 2011.

Hosoda M, Aoki-Kinoshita KF. "Development of a Multiple Glycan Alignment Tool", Annual Meeting for the Japanese Society for Bioinformatics. Kobe, Japan, P-53, November 8-10, 2011.

Araki J, Aoki-Kinoshita, KF. ”Development of a data management system in FlyGlycoDB”,  The 71st Okazaki Conference on "New perspectives on molecular science of glycoconjugates", Okazaki, Japan, October 12-14, 2011.

Fujita A, Mori T, Aoki-Kinoshita KF. "RINGS: a web resource for glycome informatics analysis", The 71st Okazaki Conference on "New perspectives on molecular science of glycoconjugates", Okazaki, Japan, October 12-14, 2011.

Hosoda, M, Aoki-Kinoshita KF. "Development of a tool for profile analysis of glycan recognition patterns", The Japanese Biochemical Society Annual Meeting, Kyoto, Japan, 4P-0456, September 24, 2011.

Fujita, A, Mori, T, Aoki-Kinoshita KF. "RINGS:A web resource for glycome infomatics", The Japanese Biochemical Society Annual Meeting, Kyoto, Japan, 4P-0458, September 24, 2011.

Akune, Y, Aoki-Kinoshita KF. "Glycan biomarker prediction using Glycan Kernel Tool", The Japanese Biochemical Society Annual Meeting, Kyoto, Japan, 4P-0454, September 24, 2011.

Katoda, T, Aoki-Kinoshita KF. "Development of a glycosaminoglycan analysis system", The Japanese Biochemical Society Annual Meeting, Kyoto, Japan, 3P-0033, September 23, 2011.

Araki, J, Aoki-Kinoshita KF. "Development of a home page and a database for glyco-related genes in Drosophila.", The Japanese Biochemical Society Annual Meeting, Kyoto, Japan, 3P-0058, September 23, 2011.

Kokubu, A, Aoki-Kinoshita KF. "The automatic construction and execution of workflows on glyco-related web services", The Japanese Biochemical Society Annual Meeting, Kyoto, Japan, 3P-0056, September 23, 2011.

Akune Y, Jiang H, Aoki-Kinoshita KF. "A new tool for glycan biomarker prediction using kernel" BI01. CFG Participating Investigators Meeting, NIH campus, Bethesda, MD, USA, July 27-28, 2011.

Katoda T, Zaia J, Aoki-Kinoshita KF. "Development of a glycosaminoglycan data management system" GE12. CFG Participating Investigators Meeting, NIH campus, Bethesda, MD, USA, July 27-28, 2011.

Mori T, Fujita A, Aoki-Kinoshita KF. "Development of a web resource for glycan structure analysis" P-085. 30th Japanese Carbohydrate Symposium, Nagaoka, Japan, July 11-13, 2011.

Araki J, Aoki-Kinoshita KF. "Development of a database for glyco-related genes in Drosophila" P-086. 30th Japanese Carbohydrate Symposium, Nagaoka, Japan, July 11-13, 2011.

Hosoda M, Aoki-Kinoshita KF. "Development of a tool for prediction of glycan recognition patterns" P-087. 30th Japanese Carbohydrate Symposium, Nagaoka, Japan, July 11-13, 2011.

Akune Y, Aoki-Kinoshita KF. "A tool for glycan biomarker prediction using kernel" P-088. 30th Japanese Carbohydrate Symposium, Nagaoka, Japan, July 11-13, 2011.

Kokubu A, Aoki-Kinoshita KF. "The automatic construction of glyco-related workflows in RINGS" P-089. 30th Japanese Carbohydrate Symposium, Nagaoka, Japan, July 11-13, 2011.

Katoda T, Aoki-Kinoshita KF, Zaia J. "Development of a glycosaminoglycan data management system" P-090. 30th Japanese Carbohydrate Symposium, Nagaoka, Japan, July 11-13, 2011.

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2010

Mori T, Uchida T, Yasuoka H, Fujita A, Aoki-Kinoshita KF. "Improved usability of RINGS for glycome informatics research" S01. 2010 Annual Conference of the Japanese Society for Bioinformatics, Fukuoka, Japan, December 13-15, 2010.

Araki J, Aoki-Kinoshita KF. "Development of a data management system for glyco-related genes in Drosophila" P056. 2010 Annual Conference of the Japanese Society for Bioinformatics, Fukuoka, Japan, December 13-15, 2010.

Kokubu A, Aoki-Kinoshita KF. "The automatic construction of glyco-related workflows in RINGS" P052. 2010 Annual Conference of the Japanese Society for Bioinformatics, Fukuoka, Japan, December 13-15, 2010.

Akune Y, Jiang H, Aoki-Kinoshita KF. "Development of a new kernel tool for glycan biomarker prediction" P039. 2010 Annual Conference of the Japanese Society for Bioinformatics, Fukuoka, Japan, December 13-15, 2010.

Hosoda M, Aoki-Kinoshita KF. "Multiple Tree Alignment for Glycan Profile Analysis of Glycan Binding Proteins" P023. 2010 Annual Conference of the Japanese Society for Bioinformatics, Fukuoka, Japan, December 13-15, 2010.

Katoda T, Zaia J, Aoki-Kinoshita KF. "Development of a glycosaminoglycan data management system" P018. 2010 Annual Conference of the Japanese Society for Bioinformatics, Fukuoka, Japan, December 13-15, 2010.

Aoki-Kinoshita KF. "Data Standardization for Glyco-informatics" P9-7. Biocuration 2010, Odaiba, Tokyo, Japan, October 11-14, 2010.

Aoki-Kinoshita KF, Chen X, Ching WK, Yokozawa K, Shimada K, Hiraoka N, Maeshiro K, Furuta K. "Prediction of pancreatic cancer growth based on multiple markers" Abstract #3765. American Association for Cancer Research, 101st Annual Meeting 2010, Washington, D.C., USA, April, 2010.

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2009

Yamada S, Takase S, Aoki-Kinoshita KF. "Analysis of Glycan Recognition Sites of Viruses" P030. 20th International Conference on Genome Informatics, Yokohama, Japan, December 14-16, 2009.

Akune Y, Aoki-Kinoshita KF. "Development of a New Glycan Score Matrix" P031. 20th International Conference on Genome Informatics, Yokohama, Japan, December 14-16, 2009.

Kaiya S, Hosoda M, Aoki-Kinoshita KF. "Improvements to Profile PSTMM for Glycan Recognition Profile Prediction" P101. 20th International Conference on Genome Informatics, Yokohama, Japan, December 14-16, 2009.

Araki J, Shimahara M, Kokubu A, Aoki-Kinoshita KF. "Incorporation of New Data and Development of User Management and Feedback System in RINGS" P115. 20th International Conference on Genome Informatics, Yokohama, Japan, December 14-16, 2009.

Tadahisa K, Nishihara S, Aoki-Kinoshita KF. "FlyGlycoDB: a Database of Glycan-Related Genes and Proteins in Drosophila" P118. 20th International Conference on Genome Informatics, Yokohama, Japan, December 14-16, 2009.

Shinmachi D, Aoki-Kinoshita KF. "An Automatic Glyco-Work ow Generator in RINGS" P131. 20th International Conference on Genome Informatics, Yokohama, Japan, December 14-16, 2009.

Hosoda M, Katoda T, Shinmachi D, Kaiya S, Akune Y, Aoki-Kinoshita KF. "A Web Resource for Glycan Function Analysis: RINGS" P-075. 29th Japanese Carbohydrate Symposium, Takayama, Japan, September 9-11, 2009.

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